STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
VV21231Putative glycosidase; Predicted by orpheus program; predicted by glimmer program. (599 aa)    
Predicted Functional Partners:
VVA0079
Putative 1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
 
  
 0.519
XCC3357
Hypothetical transport protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.518
VVA0054
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.487
PULA
Putative pullulanase precursor; Predicted by orpheus program; predicted by glimmer program; Belongs to the glycosyl hydrolase 13 family.
 
  
 0.485
glgA
Putative glycogen synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
  
  
 0.480
VV21226
Putative glycogen protein GlgX; Predicted by orpheus program; predicted by glimmer program; Belongs to the glycosyl hydrolase 13 family.
 
  
 0.473
PTS18CBA
Putative PTS permease for N-acetylglucosamine and glucose; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.417
SF1105
Putative PTS system, glucose-specific IIBC; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.417
S4512
Putative PTS system, trehalose-specific IIBCcomponent; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.417
Y1767
Putative PTS system, glucose-specific IIBCcomponent; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.417
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.