STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO3846-2Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (260 aa)    
Predicted Functional Partners:
S4013
Putative thiophene and furan oxidation protein ThdF; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
   
    0.811
VP1614
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.756
HD1486
Putative Zn-ribbon-containing protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.720
VPA0165
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.707
VV20202
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.642
S3947
Putative glucose inhibited division protein A; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.
   
    0.640
VP2733
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.637
VP0175
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the PsiE family.
  
     0.612
BB1264
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.609
VVA0915-2
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.593
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.