STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YPO3455Putative anaerobic ribonucleoside-triphosphate reductase activating protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine. (174 aa)    
Predicted Functional Partners:
S4514
Putative anaerobic ribonucleoside-triphosphate reductase; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.992
T2876
Conserved hypothetical protein; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).
  
  
 0.904
SO2179
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.900
SF4412
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.863
ECS0498
Putative exsB protein; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family.
  
  
 0.784
S2814
Putative formate acetyl transferase-related protein; Acts as a radical domain for damaged PFL and possibly other radical proteins.
  
     0.574
folE
GTP cyclohydrolase I; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.558
YPO1383
Putative formate acetyltransferase; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.558
PFLA
Putative pyruvate formate-lyase 1 activating enzyme; Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine; Belongs to the organic radical-activating enzymes family.
 
     0.528
ADHE
Putative alcohol dehydrogenase/acetaldehyde dehydrogenase; Predicted by orpheus program; predicted by glimmer program; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
 
   
 0.507
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.