STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CV1409Putative serine transporter; Predicted by orpheus program; predicted by glimmer program. (464 aa)    
Predicted Functional Partners:
MTR
Putative tryptophan-specific transport protein; Predicted by orpheus program; predicted by glimmer program.
  
   
 0.521
PBPRA1345
Hypothetical tryptophan-specific transport protein; Predicted by orpheus program; predicted by glimmer program.
  
   
 0.509
VPA0243
Putative virK protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.429
T1051
Putative L-serine dehydratase 1; Predicted by orpheus program; predicted by glimmer program; Belongs to the iron-sulfur dependent L-serine dehydratase family.
 
  
 0.428
TYRP
Putative tyrosine-specific transport protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.410
WAVC
Conserved hypothetical protein; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family.
    
 0.407
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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