STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XYLEHyopthetical permease; Predicted by orpheus program; predicted by glimmer program; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family. (480 aa)    
Predicted Functional Partners:
PBPRB0459
Hypothetical transcriptional regulator; Predicted by orpheus program; predicted by glimmer program; Belongs to the LysR transcriptional regulatory family.
       0.565
R00354
Putative carbohydrate kinase; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.514
PLU2275
Putative D-xylose isomerase; Predicted by orpheus program; predicted by glimmer program; Belongs to the xylose isomerase family.
 
   
 0.471
PBPRB0465
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
   
  
 0.461
ATU4509
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
   
  
 0.461
GALK
Putative galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
 
   
 0.450
RS02747
Hypothetical acetolactate synthase, iolD; Predicted by orpheus program; predicted by glimmer program; Belongs to the TPP enzyme family.
  
  
 0.435
AGR_L_71
Putative acetolactate synthase; Predicted by orpheus program; predicted by glimmer program; Belongs to the TPP enzyme family.
  
  
 0.435
Z5085
Putative permease; Predicted by orpheus program; predicted by glimmer program.
  
   
 0.428
XCC3357
Hypothetical transport protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.421
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.