STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ATU4509Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (276 aa)    
Predicted Functional Partners:
RS02747
Hypothetical acetolactate synthase, iolD; Predicted by orpheus program; predicted by glimmer program; Belongs to the TPP enzyme family.
 
 
 0.995
AGR_L_71
Putative acetolactate synthase; Predicted by orpheus program; predicted by glimmer program; Belongs to the TPP enzyme family.
 
 
 0.995
R00354
Putative carbohydrate kinase; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.994
SC8F11.0
Hypothetical pfkB family carbohydrate kinase; Catalyzes the phosphorylation of 5-dehydro-2-deoxy-D- gluconate (2-deoxy-5-keto-D-gluconate or DKG) to 6-phospho-5-dehydro-2- deoxy-D-gluconate (DKGP).
 
 
 0.982
PBPRB0465
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
  
 
0.927
AGR_L_16
Hypothetical myo-inositol 2-dehydrogenase; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.914
CTC00512
Hypothetical myo-inositol catabolismprotein iolB; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.910
BRA0715
Putative myo-inositol catabolismprotein iolB; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.910
ATU4514-2
Hypothetical transcriptional regulator; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.758
ATU4514
Putative transcriptional regulator; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.753
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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