STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MSHA-2Hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (168 aa)    
Predicted Functional Partners:
VV2949
Hypothetical MSHA biogenesis protein MshJ; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.798
MSHL
Putative MSHA biogenesis protein MshL; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.797
VP0139
Putative Type II secretory pathway, component EpsJ; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.793
VP2694
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.787
VP2695
Hypothetical pilin protein; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.782
VV2950
Hypothetical MSHA biogenesis protein MshI; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.782
PBPRA3271
Hypothetical MSHA biogenesis protein MshQ; Predicted by orpheus program; predicted by glimmer program.
 
     0.765
SO0173
Hypothetical general secretion pathway protein K; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.760
PBPRA3281
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.745
MSHP
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.737
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.