STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ATU3179Hipothetical ABC transporter permease protein; Predicted by orpheus program; predicted by glimmer program. (288 aa)    
Predicted Functional Partners:
LL1318
Hypothetical ABC transporter, ATP-binding protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.994
CV3064
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the bacterial solute-binding protein 9 family.
  
 0.994
PP3802
Putative putative ATP-binding component of ABC transporter; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.970
STM1892
Putative zinc ABC transporter, ATP-binding protein; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family.
  
 
 0.948
FN1813
Putative adhesion protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the bacterial solute-binding protein 9 family.
 
  
 0.903
C2271
Hypothetical zinc ABC transporter, periplasmiczinc-binding protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.774
VPA0165
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.679
T0986
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.595
Z5645
Putative zinc uptake regulation protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the Fur family.
 
  
 0.561
Y1329
Hypothetical exported protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.549
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.