STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV3064Hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the bacterial solute-binding protein 9 family. (356 aa)    
Predicted Functional Partners:
LL1318
Hypothetical ABC transporter, ATP-binding protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.994
ATU3179
Hipothetical ABC transporter permease protein; Predicted by orpheus program; predicted by glimmer program.
  
 0.994
FNV1484
Putative permease of ABC transporter; Predicted by orpheus program; predicted by glimmer program.
  
 0.910
PP3802
Putative putative ATP-binding component of ABC transporter; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.860
ZUNB
Putative ABC-type Mn2+/Zn2+ transport system, permease component; Predicted by orpheus program; predicted by glimmer program.
  
 0.845
VPA0160
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
    0.702
VPA0161
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
    0.697
STM1892
Putative zinc ABC transporter, ATP-binding protein; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family.
  
  
 0.670
STY2448
Putative cobalamin synthesis protein; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.625
VPA0165
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
    0.563
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.