Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KEFCHypothetical protein; Predicted by orpheus program; predicted by glimmer program. (189 aa)    
Predicted Functional Partners:
RS00549
Putative TrkA family protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
  
 0.996
VC2607
Putative NAD(P)H oxidoreductase; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.971
RSC3097
Putative NAD(P)H oxidoreductase; Regulatory subunit of a potassium efflux system that confers protection against electrophiles. Required for full activity of KefB.
 
 
 0.942
SO0695
Putative glutathione-regulated potassium-efflux system protein KefB; Predicted by orpheus program; predicted by glimmer program; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
 
   
 0.842
S3273
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.827
SMA1168
Hypothetical oxidoreductase; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.781
CV1706
Putative FlgG flagellar basal-body rod protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the flagella basal body rod proteins family.
    
   0.722
XAC1981
Putative polar flagellar FlgG; Predicted by orpheus program; predicted by glimmer program; Belongs to the flagella basal body rod proteins family.
    
   0.722
CBU0459
Hypothetical sodium/hydrogen antiporter family protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.690
ECS2000
Putative pyruvate oxidoreductase; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.591
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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