Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
VVA1653Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (650 aa)    
Predicted Functional Partners:
CV0309
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.970
PLU4008
Putative sensor histidine kinase FexB; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.941
VV10551
Hypothetical sensory box/GGDEF family protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.939
SO4318
Putative toxin secretion ATP-binding protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.934
AGGA
Putative agglutination protein; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.918
VVA0333
Putative secretion protein, HlyD family; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.918
STM2958
Putative sensor histidine kinase/response regulator; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.902
PBPRB0026
Hypothetical sensor protein TorS; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.899
VVA0633
Hypothetical sensor protein TorS; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.876
PBPRB0060
Putative BaeS, Signal transduction histidine kinase; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.876
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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