STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PBPRB0593Hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (495 aa)    
Predicted Functional Partners:
APRE
Alkaline serine protease; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.830
PBPRB0592
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.783
VPA1172
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.735
PBPRA0349
Putative periplasmic protein involved in polysaccharide export; Predicted by orpheus program; predicted by glimmer program.
  
     0.692
PBPRA1162
Hypothetical cell division protein FtsK; Predicted by orpheus program; predicted by glimmer program.
    
 
 0.684
S3696
Hypothetical outer membrane cobalamin receptor protein; Involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space. It derives its energy for transport by interacting with the trans- periplasmic membrane protein TonB; Belongs to the TonB-dependent receptor family. BtuB (TC 1.B.14.3.1) subfamily.
    
   0.637
PBPRB0652
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
    
   0.620
VP1464
Putative membrane protein of ExoQ family, involved in exopolysaccharide production; Predicted by orpheus program; predicted by glimmer program.
  
     0.601
PBPRA1880
Unknown protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 
 0.521
VP1462
Hypothetical polysaccharide export protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.498
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.