STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO2448Putative MutT/nudix family protein; Predicted by orpheus program; predicted by glimmer program. (190 aa)    
Predicted Functional Partners:
VV20202
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.685
VVA0269
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.640
VP1614
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.571
PFAC
Omega-3 polyunsaturated fatty acid synthase PfaC; Predicted by orpheus program; predicted by glimmer program; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
   
 0.569
MRCB-2
Hypothetical membrane carboxypeptidase; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits).
  
    0.545
SO3846
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.533
SO3846-2
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.514
SO3403
Hypothetical ribosomal subunit interface protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.512
VCA0779
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.489
VP1985
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.487
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.