STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
STM3221Putative metal-dependent hydrolase; Predicted by orpheus program; predicted by glimmer program. (168 aa)    
Predicted Functional Partners:
STY3083
Putative MazG protein; Predicted by orpheus program; predicted by glimmer program.
    
  0.910
UDK
Putative uridine kinase; Predicted by orpheus program; predicted by glimmer program.
    
  0.905
YJJG
Putative haloacid dehalogenase-like hydrolase family protein; Predicted by orpheus program; predicted by glimmer program.
    
  0.902
ECS0533
Predicted by orpheus program; predicted by glimmer program; Belongs to the 5'-nucleotidase family.
  
 
  0.901
SO3317
Hypothetical 5`-nucleotidase; Predicted by orpheus program; predicted by glimmer program; Belongs to the 5'-nucleotidase family.
  
 
  0.901
PBPRB1892
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the 5'-nucleotidase family.
  
 
  0.901
PLU1372
Putative nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
    
  0.900
pyrF
Putative orotidine 5-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily.
     
  0.900
PLU2759
Putative uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.
     
  0.900
SO1631
Putative Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
     
  0.900
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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