STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VCA0779Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (488 aa)    
Predicted Functional Partners:
VVA1025
Putative electron transfer flavoprotein,beta subunit; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.846
RSC1567
Putative electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.
  
 
 0.827
VV0224
Hypothetical general secretion pathway protein N; Predicted by orpheus program; predicted by glimmer program.
  
     0.689
SO3144
Putative electron transfer flavoprotein, alpha subunit; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.685
BLL4924
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.679
NMA1272
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.672
VPA1172
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.672
VP2733
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.578
VV20202
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.573
PBPRA2393
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.551
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.