STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VC2213Hypothetical outer membrane protein OmpA; Predicted by orpheus program; predicted by glimmer program; Belongs to the outer membrane OOP (TC 1.B.6) superfamily. (324 aa)    
Predicted Functional Partners:
VV2275
Putative TolB protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.730
PBPRA0350
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.724
PAL
Putative peptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
   
 0.699
PSPTO229
Putative outer membrane protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.677
SO2194
Hypothetical OmpA family protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.667
STY3364
Putative outer membrane protein TolC; Predicted by orpheus program; predicted by glimmer program.
   
 
 0.651
VV2720
ompL_phopr porin-like protein L precursor; Forms pores that allow passive diffusion of small molecules across the outer membrane; Belongs to the Gram-negative porin family.
  
 0.643
RLPB
Hypothetical rare lipoprotein B; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane.
   
  
 0.608
S3696
Hypothetical outer membrane cobalamin receptor protein; Involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space. It derives its energy for transport by interacting with the trans- periplasmic membrane protein TonB; Belongs to the TonB-dependent receptor family. BtuB (TC 1.B.14.3.1) subfamily.
  
  
 0.600
VV1262
Hypothetical AsmA protein; Predicted by orpheus program; predicted by glimmer program.
   
  
 0.551
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.