STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBPRB0656Hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (549 aa)    
Predicted Functional Partners:
PLU4008
Putative sensor histidine kinase FexB; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.872
CHEV-2
Putative chemotaxis protein CheV; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.848
VV21182
Hypothetical two-component sensor; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.824
SO2742
Putative Signal transduction histidinekinase; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.815
VV10551
Hypothetical sensory box/GGDEF family protein; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.808
PBPRB0538
Hypothetical two-component sensor; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.786
SO3208
Putative chemotaxis protein CheZ; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P).
 
 
 0.747
PA1561
Putative methyl-accepting chemotaxis protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.724
AER-2
Hypothetical methyl-accepting chemotaxis protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.702
PBPRA2502
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.701
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.