STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBPRB0664Hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (297 aa)    
Predicted Functional Partners:
VV2739
Putative endoglucanase-related protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.663
VV12152
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.554
YBJD
Hypothetical ATP-dependent endonuclease of the OLD family; Predicted by orpheus program; predicted by glimmer program.
  
     0.549
PBPRA2781
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.499
PBPRB1701
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.487
YFMJ
Hypothetical alcohol dehydrogenase, zinc-containing; Predicted by orpheus program; predicted by glimmer program.
  
    0.485
C4793
Putative fatty oxidation complex, alpha subunit; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.
  
 
 0.471
C2886
Putative fatty oxidation complex, alpha subunit; Catalyzes the formation of a hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3- hydroxyacyl-CoA dehydrogenase activities; In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.471
PBPRA1667
Putative Beta-ketoacyl synthase; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.443
MT0138
Hypothetical acyl dehydratase; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.442
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.