STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VVA0998Hypothetical transcriptional regulator, TetR family; Predicted by orpheus program; predicted by glimmer program. (195 aa)    
Predicted Functional Partners:
SO3393
Putative transcriptional regulator, TetR family; Predicted by orpheus program; predicted by glimmer program.
  
     0.771
SPR0370
Hypothetical alkylhydroperoxidase AhpD domain protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.757
CC2088
Putative glutathione S-transferase; Predicted by orpheus program; predicted by glimmer program.
       0.595
RSC2021
Putative glutathione S-transferase; Predicted by orpheus program; predicted by glimmer program; Belongs to the GST superfamily.
       0.498
CV4366
Putative transcriptional regulator, AraC/XylSfamily; Predicted by orpheus program; predicted by glimmer program.
  
     0.460
MORB
Putative N-ethylmaleimide reductase; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.458
XENB
Putative NADH-dependent flavin oxidoreductase; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.458
NEMA2-2
Putative N-ethylmaleimide reductase; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.458
SMC02239
Conserved hypothetical protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
 
     0.451
AGR_PAT_-5
Putative transcriptional regulator, AraC/XylS family; Predicted by orpheus program; predicted by glimmer program.
 
     0.430
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.