STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VVA0998Hypothetical transcriptional regulator, TetR family; Predicted by orpheus program; predicted by glimmer program. (195 aa)    
Predicted Functional Partners:
SO3393
Putative transcriptional regulator, TetR family; Predicted by orpheus program; predicted by glimmer program.
  
     0.771
SPR0370
Hypothetical alkylhydroperoxidase AhpD domain protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.756
CC2088
Putative glutathione S-transferase; Predicted by orpheus program; predicted by glimmer program.
       0.593
RSC2021
Putative glutathione S-transferase; Predicted by orpheus program; predicted by glimmer program; Belongs to the GST superfamily.
       0.481
CV4366
Putative transcriptional regulator, AraC/XylSfamily; Predicted by orpheus program; predicted by glimmer program.
  
     0.460
SMC02239
Conserved hypothetical protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
 
     0.449
SO0996
Putative lactoylglutathione lyase; Predicted by orpheus program; predicted by glimmer program.
  
     0.406
AGR_PAT_-5
Putative transcriptional regulator, AraC/XylS family; Predicted by orpheus program; predicted by glimmer program.
 
     0.405
ATU2187
Hypothetical transcriptional regulator, ArsR family; Predicted by orpheus program; predicted by glimmer program.
  
     0.400
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.