STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
YPO3627Hypothetical putative ABC transporter,ATP-binding; Predicted by orpheus program; predicted by glimmer program. (260 aa)    
Predicted Functional Partners:
AGR_L_30-2
Putative ABC transporter substrate-binding protein; Predicted by orpheus program; predicted by glimmer program.
 
 0.999
AGR_L_30-3
Putative ABC transporter permease protein; Predicted by orpheus program; predicted by glimmer program.
 
 0.999
C2630
Putative phosphomethylpyrimidine kinase; Predicted by orpheus program; predicted by glimmer program.
 
     0.851
NCU07849
Putative transcriptional activator; Predicted by orpheus program; predicted by glimmer program.
 
    0.801
C0841
Putative molybdenum transport system permeaseprotein ModB; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
    
 0.545
cysH
Putative phosphoadenosine phosphosulfatereductase; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily.
  
  
 0.484
VV0411
Putative sulfate adenylate transferase,subunit 2; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.476
HD1953
Putative ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
  
     0.451
YPO2911
Putative nitrogen regulatory protein P-II; Predicted by orpheus program; predicted by glimmer program; Belongs to the P(II) protein family.
    
 
 0.446
PBPRA0985
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
    
 
 0.446
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.