STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
ASPC-1Putative amino acid biosynthesisaminotransferase; Predicted by orpheus program; predicted by glimmer program. (393 aa)    
Predicted Functional Partners:
MDH
Putative malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate.
   
 0.967
BPP3767
Putative 4-hydroxyphenylpyruvate dioxygenase; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.964
PP4490
Putative phenylalanine-4-hydroxylase; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.958
PM0150
Putative chorismate mutase/prephenate dehydratase; Predicted by orpheus program; predicted by glimmer program.
    
 0.943
STM2669
Putative chorismate mutase/prephenate dehydrogenase; Predicted by orpheus program; predicted by glimmer program.
    
 0.942
CV3084
Putative NAD-glutamate dehydrogenase; Predicted by orpheus program; predicted by glimmer program.
     
 0.930
AAT
Putative aspartate aminotransferase; Predicted by orpheus program; predicted by glimmer program.
   
 0.924
argH
Putative argininosuccinase and n-acetylglutamate synthase; Predicted by orpheus program; predicted by glimmer program; In the N-terminal section; belongs to the lyase 1 family. Argininosuccinate lyase subfamily.
   
 
 0.923
Y1198
Putative asparagine synthetase B, glutamine-hydrolyzing; Predicted by orpheus program; predicted by glimmer program.
   
 0.922
hisC
Putative histidinol-phosphate aminotransferase; Predicted by orpheus program; predicted by glimmer program; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
   
 
 0.921
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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