STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP0166Putative biopolymer transport proteinExbB-related protein; Predicted by orpheus program; predicted by glimmer program. (455 aa)    
Predicted Functional Partners:
SO1827
Putative TonB system transport protein ExbD2; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.985
TONB2
Hypothetical tonB2 protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.981
SO1824
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.949
VVA0915
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
    0.942
SO1827-2
Putative TonB system transport protein ExbD2; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.938
TONB2-2
Putative TonB2 protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.920
SO1826
Putative TonB system transport protein ExbB2; Predicted by orpheus program; predicted by glimmer program.
 
    
0.837
STY0792
Putative tolR membrane protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 0.803
SO1824-2
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.787
VVA0915-2
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.768
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.