STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
YPO1813Putative periplasmic binding protein; Predicted by orpheus program; predicted by glimmer program. (324 aa)    
Predicted Functional Partners:
CV3017
Putative permease of ABC transporter; Predicted by orpheus program; predicted by glimmer program; Belongs to the binding-protein-dependent transport system permease family.
 
 0.969
ATU4322
Putative ABC transporter, permease protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the binding-protein-dependent transport system permease family.
 
 0.966
RB0303
Putative ATP-binding protein of ABCtransporter; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.948
PLU4008
Putative sensor histidine kinase FexB; Predicted by orpheus program; predicted by glimmer program.
   
 
 0.840
STM2958
Putative sensor histidine kinase/response regulator; Predicted by orpheus program; predicted by glimmer program.
   
 
 0.837
ATU4324
Putative carbohydrate kinase; Predicted by orpheus program; predicted by glimmer program.
 
    0.835
C4676
Hypothetical ribose ABC transporter protein; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
 
  
 0.830
PBPRB0026
Hypothetical sensor protein TorS; Predicted by orpheus program; predicted by glimmer program.
   
 
 0.820
VVA0633
Hypothetical sensor protein TorS; Predicted by orpheus program; predicted by glimmer program.
   
 
 0.806
PBPRB0060
Putative BaeS, Signal transduction histidine kinase; Predicted by orpheus program; predicted by glimmer program.
   
 
 0.806
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.