STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB0303Putative ATP-binding protein of ABCtransporter; Predicted by orpheus program; predicted by glimmer program. (506 aa)    
Predicted Functional Partners:
CV3017
Putative permease of ABC transporter; Predicted by orpheus program; predicted by glimmer program; Belongs to the binding-protein-dependent transport system permease family.
 
 0.976
ATU4322
Putative ABC transporter, permease protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the binding-protein-dependent transport system permease family.
 
 0.973
YPO1813
Putative periplasmic binding protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.931
SPY1301
Hypothetical ABC-type sugar transport systems,permease components; Predicted by orpheus program; predicted by glimmer program.
   
 
 0.902
PLU0057
Putative ribose ABC transporter, permease protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the binding-protein-dependent transport system permease family.
 
 0.901
YPO0854
Hypothetical ABC-type maltose transport systems,permease component; Predicted by orpheus program; predicted by glimmer program.
     
 0.900
CTC00906
Putative sugar ABC transporter (permease); Predicted by orpheus program; predicted by glimmer program; Belongs to the binding-protein-dependent transport system permease family.
 
 0.892
PBPRB0019
Putative AraH,Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; Predicted by orpheus program; predicted by glimmer program; Belongs to the binding-protein-dependent transport system permease family.
 
 0.888
ATU4551
Putative sugar ABC transporter, periplasmic sugar-binding; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.876
Z5252
Putative ribose ABC transporter, periplasmic D-ribose-binding protein; Predicted by orpheus program; predicted by glimmer program.
 
 0.844
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.