STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PBPRB0731Hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (326 aa)    
Predicted Functional Partners:
MT1767
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.946
CV0599
Putative cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
   
 
 0.730
SO3144
Putative electron transfer flavoprotein, alpha subunit; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.560
VVA1025
Putative electron transfer flavoprotein,beta subunit; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.531
PBPRA1667
Putative Beta-ketoacyl synthase; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.524
PBPRB0732
Hypothetical Zn-dependent peptidases; Predicted by orpheus program; predicted by glimmer program; Belongs to the peptidase M16 family.
   
  0.518
ECS2000
Putative pyruvate oxidoreductase; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.476
S3567
Putative glycerol-3-phosphate acyltransferase; Predicted by orpheus program; predicted by glimmer program; Belongs to the GPAT/DAPAT family.
    
 0.460
PBPRB0014
Hypothetical acyltransferase family protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 
 0.433
SP1862
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.411
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.