STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBPRB0735Hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (186 aa)    
Predicted Functional Partners:
CC1346
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
    0.509
PA3304
Putative membrane protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
     0.480
PLU2133
Hypothetical starvation-inducible outer membrane lipoprotein; Predicted by orpheus program; predicted by glimmer program.
   
  
 0.436
SO1769
Hypothetical Glutamate decarboxylase; Predicted by orpheus program; predicted by glimmer program.
   
  
 0.435
SMB21414
Hypothetical amino acid decarboxylase; Predicted by orpheus program; predicted by glimmer program.
   
  
 0.435
VP1942
Putative diaminobutyrate-pyruvate transaminase & L-2,4-diaminobutyrate decarboxylase; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.426
AGR_C_45
Putative multidrug efflux membrane fusion protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
    0.415
R01158
Hypothetical acetyltransferase; Predicted by orpheus program; predicted by glimmer program.
  
     0.408
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.