STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VPA1625Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (164 aa)    
Predicted Functional Partners:
RSC1276
Putative cytochrome c oxidase, subunit CcoN; Predicted by orpheus program; predicted by glimmer program; Belongs to the heme-copper respiratory oxidase family.
  
 
 0.873
AT3G0895
Hypothetical Sco1-related protein; Predicted by orpheus program; predicted by glimmer program.
     
 0.850
PP4251
Putative Cbb3-type cytochrome oxidase, cytochrome c subunit; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.762
SO1400
Putative membrane protein; Predicted by orpheus program; predicted by glimmer program.
       0.620
CCOQ-1
Putative cytochrome c oxidase, subunit CcoQ; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.581
RSC2927
Putative ubiquinol--cytochrome c reductase,cytochrome c1; Predicted by orpheus program; predicted by glimmer program.
    
   0.525
XAC2456
Putative Ubiquinol-cytochrome c reductase,cytochrome B; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
    
   0.525
CV4008
Putative ubiquinol-cytochrome c reductase,iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
    
   0.525
PSPTO200
Putative cytochrome c oxidase, subunit CcoP; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
  
 
 0.424
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.