STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BRA0137Hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (483 aa)    
Predicted Functional Partners:
PA4819
Hypothetical glycosyl transferase; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.989
XAC1221
Hypothetical two-component response regulator; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.678
PBPRB0748
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.669
fmt
Putative Methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
  
 0.601
FLAA2
Putative FlmB; Predicted by orpheus program; predicted by glimmer program; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.596
PBPRA0498
Hypothetical phospho-beta-glucosidase; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.564
S3621
Hypothetical membrane protein; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.473
VC1280
Putative deacetylase DA1; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.467
RB1169
Putative polysaccharide deacetylase family protein; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.467
YPO1952
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.467
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.