STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO2194Hypothetical OmpA family protein; Predicted by orpheus program; predicted by glimmer program. (252 aa)    
Predicted Functional Partners:
VV2275
Putative TolB protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 0.769
PBPRA0350
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.745
S4183
Putative OmpA family protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.728
VV13102
Putative sodium-type flagellar protein MotY; Predicted by orpheus program; predicted by glimmer program.
  
     0.724
PBPRA0019
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.702
OPRF
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.695
PBPRA2505
Conserved hypothetical outer membrane protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.693
PBPRB0916
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.668
VC2213
Hypothetical outer membrane protein OmpA; Predicted by orpheus program; predicted by glimmer program; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
  
     0.667
SO2192
Hypothetical sensor histidine kinase; Predicted by orpheus program; predicted by glimmer program.
 
     0.542
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.