STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PHNDHypothetical ABC-type phosphate/phosphonate transport system, periplasmic component; Predicted by orpheus program; predicted by glimmer program. (282 aa)    
Predicted Functional Partners:
PHNC
Hypothetical phosphonate ABC transporter,ATP-binding protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.996
PBPRB0773
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.980
PBPRB1945
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.935
Z5706
Hypothetical membrane channel protein component of Pn transporter; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.932
PBPRB1010
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.666
Z0657
Hypothetical ATPase; Involved in the post-transcriptional modification of the uridine at the wobble position (U34) of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Catalyzes the conversion of 2-thiouridine (S2U-RNA) to 2- selenouridine (Se2U-RNA). Acts in a two-step process involving geranylation of 2-thiouridine (S2U) to S-geranyl-2-thiouridine (geS2U) and subsequent selenation of the latter derivative to 2-selenouridine (Se2U) in the tRNA chain.
 
     0.622
YPO1178
Putative adenylate cyclase CyaB; Predicted by orpheus program; predicted by glimmer program.
       0.520
PBPRA1384
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
   
    0.481
PBPRB1619
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the peptidase S1B family.
   
    0.481
PBPRB1721
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
   
    0.481
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.