STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ECS0919Putative D-alanyl-D-alanine carboxypeptidase; Predicted by orpheus program; predicted by glimmer program; Belongs to the peptidase S11 family. (394 aa)    
Predicted Functional Partners:
S3440
Hypothetical D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; Predicted by orpheus program; predicted by glimmer program.
     
 0.922
S4348
Putative penicillin-binding protein 1A; Predicted by orpheus program; predicted by glimmer program.
     
 0.919
Y1175
Putative D-alanyl-D-alanine carboxypeptidase; Predicted by orpheus program; predicted by glimmer program; Belongs to the peptidase S11 family.
  
  
 
0.906
YPO1320
Putative D-alanyl-D-alanine carboxypeptidase; Predicted by orpheus program; predicted by glimmer program; Belongs to the peptidase S11 family.
  
  
 
0.905
PBPRB0792
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.542
PLU3660
Putative division protein FtsI; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily.
 
  
 0.437
HD0172
Putative MutT/nudix family protein; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily.
 
     0.433
SO0052
Putative protein-transport protein SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.
  
    0.430
SO4098
Putative MreB, Actin-like ATPase involved in cell morphogenesis; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.419
PBPRA1162
Hypothetical cell division protein FtsK; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.404
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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