STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SO0935Putative Na+/H+ antiporter; Predicted by orpheus program; predicted by glimmer program. (501 aa)    
Predicted Functional Partners:
NHAA
Putative Na+/H+ antiporter; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter family.
     
 0.525
PBPRA2210
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
  
  
 0.524
PBPRB0792
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.511
PBPRB0794
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.503
VV2984
Putative ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
   
    0.480
PLU1596
Hypothetical leucyl/phenylalanyl-tRNA-proteintransferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine.
   
  
 0.464
ARSR
Hypothetical transcriptional regulator, ArsR family; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.446
PBPRB0283
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.402
PBPRB1551
Hypothetical thioredoxin reductase; Predicted by orpheus program; predicted by glimmer program.
     
 0.400
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.