STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MM2279Putative Cytosine deaminase; Predicted by orpheus program; predicted by glimmer program. (267 aa)    
Predicted Functional Partners:
SSNA
Putative cytosine deaminase; Predicted by orpheus program; predicted by glimmer program.
     0.994
PFS
Putative MTA/SAH nucleosidase; Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S-adenosylhomocysteine (SAH/AdoHcy) to adenine and the corresponding thioribose, 5'- methylthioribose and S-ribosylhomocysteine, respectively. Belongs to the PNP/UDP phosphorylase family. MtnN subfamily.
    
 0.905
PBPRA1945
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
   
 
  0.903
C3115
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the multicopper oxidase YfiH/RL5 family.
     
  0.900
AINS
Hypothetical autoinducer synthase; Predicted by orpheus program; predicted by glimmer program.
     
  0.900
ECS3752
Putative proteoglycan; Predicted by orpheus program; predicted by glimmer program.
  
     0.725
FADD
Putative long-chain-fatty-acid-CoA ligase; Predicted by orpheus program; predicted by glimmer program.
      
 0.574
HD1188
3R-hydroxymyristoyl-acyl-carrier-protein dehydratase; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs.
      
 0.514
SF4051
Putative BirA bifunctional protein; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon.
 
  
 0.490
FABB
Putative 3-oxoacyl-[acyl-carrier-protein] synthase I; Predicted by orpheus program; predicted by glimmer program; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
      
 0.457
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.