STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VMRAPutative MATE efflux family protein; Predicted by orpheus program; predicted by glimmer program. (445 aa)    
Predicted Functional Partners:
VVA1228
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.650
VAG
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
   
 0.493
SSNA
Putative cytosine deaminase; Predicted by orpheus program; predicted by glimmer program.
  
    0.448
MM2279
Putative Cytosine deaminase; Predicted by orpheus program; predicted by glimmer program.
  
    0.448
RPSA
Putative ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
   
    0.442
AGCG4342
Putative cyclic nucleotide binding protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.405
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.