Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
YPO0237Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (93 aa)    
Predicted Functional Partners:
PLU3549
Putative peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
   
 
 0.888
Y4016
Putative ribosomal protein L17; Predicted by orpheus program; predicted by glimmer program.
   
   0.874
RPS15
Putative ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
    
 
 0.868
BFL058
Putative ribosomal protein S21; Predicted by orpheus program; predicted by glimmer program; Belongs to the bacterial ribosomal protein bS21 family.
    
 
 0.866
SO2780
Putative ribosomal protein L32 (rpL32); Predicted by orpheus program; predicted by glimmer program; Belongs to the bacterial ribosomal protein bL32 family.
    
 
 0.864
rpsD
Putative ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
   
   0.861
PLU4864
Putative ribosomal protein L28; Predicted by orpheus program; predicted by glimmer program; Belongs to the bacterial ribosomal protein bL28 family.
    
   0.860
SO4246
Putative ribosomal protein L33; Predicted by orpheus program; predicted by glimmer program; Belongs to the bacterial ribosomal protein bL33 family.
    
   0.860
VV3032
Putative ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.
    
   0.860
SO0227
Putative ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.
    
   0.860
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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