STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
T0261Hypothetical thioredoxin 2; Predicted by orpheus program; predicted by glimmer program. (166 aa)    
Predicted Functional Partners:
C1025
Putative thioredoxin reductase; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.811
PBPRB1551
Hypothetical thioredoxin reductase; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.769
GROEL
Putative chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
   
 
 0.741
PBPRB0823
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.675
NMB0946
Putative peroxiredoxin/glutaredoxin family protein; Predicted by orpheus program; predicted by glimmer program.
   
 
 0.583
PLU3372
Putative heat shock protein GrpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several round [...]
 
  
 0.525
PM1235
Putative glutathione reductase; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.509
PBPRA2210
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
  
 
 0.506
C3973
Putative glutamate synthase, large subunit; Predicted by orpheus program; predicted by glimmer program.
   
 
 0.484
BH1728
Putative glutamate synthase, large subunit; Predicted by orpheus program; predicted by glimmer program.
   
 
 0.484
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.