STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RS02318Hypothetical methanol dehydrogenase,NAD-dependent; Predicted by orpheus program; predicted by glimmer program. (385 aa)    
Predicted Functional Partners:
R02212
Hypothetical aldehyde dehydrogenase; Predicted by orpheus program; predicted by glimmer program; Belongs to the aldehyde dehydrogenase family.
 
 
 0.832
SCI35.35
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the glutamine synthetase family.
 
   
 0.768
ECS2000
Putative pyruvate oxidoreductase; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.652
CC0409
Hypothetical amidotransferase; Predicted by orpheus program; predicted by glimmer program.
     
 0.646
glgA
Putative glycogen synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
   
    0.547
PA3629
Putative alcohol dehydrogenase class III; Predicted by orpheus program; predicted by glimmer program; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
    
 
 0.523
PA3629-2
Putative alcohol dehydrogenase class III; Predicted by orpheus program; predicted by glimmer program; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
    
 
 0.523
S4341
Putative phosphoenolpyruvate carboxykinase; Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA. Belongs to the phosphoenolpyruvate carboxykinase (ATP) family.
   
  
 0.509
PAB1859
Hypothetical pyruvate formate lyase-activating enzyme; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.417
T4608
Hypothetical pyruvate formate lyase activating enzyme; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.417
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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