STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCI35.35Hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the glutamine synthetase family. (455 aa)    
Predicted Functional Partners:
C3973
Putative glutamate synthase, large subunit; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.975
BH1728
Putative glutamate synthase, large subunit; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.975
S3959
Putative glucosamine-fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
  
 
 0.937
SF0029
Putative carbamoyl-phosphate synthase, small subunit; Predicted by orpheus program; predicted by glimmer program; Belongs to the CarA family.
  
 
 0.931
CARB
Putative carbamoylphosphate synthase large subunit; Predicted by orpheus program; predicted by glimmer program; Belongs to the CarB family.
  
 
 0.929
RSC3301
Putative proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
   
 
 0.928
YPO2772
Putative glutamine phosphoribosylpyrophosphate amidotransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine; In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family.
    
 0.927
SF1569
Putative glutaminase family protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the glutaminase family.
    
 0.923
SF3253
Putative glutamate synthase, small subunit; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.920
MT3973
Putative glutamate synthase, small subunit; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.920
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.