Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PBPRB0863Hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (272 aa)    
Predicted Functional Partners:
CV4008
Putative ubiquinol-cytochrome c reductase,iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.939
XAC2456
Putative Ubiquinol-cytochrome c reductase,cytochrome B; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.878
PP4251
Putative Cbb3-type cytochrome oxidase, cytochrome c subunit; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.851
RSC1276
Putative cytochrome c oxidase, subunit CcoN; Predicted by orpheus program; predicted by glimmer program; Belongs to the heme-copper respiratory oxidase family.
  
 
 0.821
NE2004
Putative nitric-oxide reductase subunit B; Predicted by orpheus program; predicted by glimmer program; Belongs to the heme-copper respiratory oxidase family.
  
 
 0.808
CV0599
Putative cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
 
 
 0.777
RSC2927
Putative ubiquinol--cytochrome c reductase,cytochrome c1; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.761
RSP1564
Hypothetical cytochrome c oxidase subunit II; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.747
BPP4242
Putative cytochrome c oxidase, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
  
 
 0.742
GLR0740
Putative cytochrome C oxidase; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
  
 
 0.742
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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