STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB3999-2Hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the 'phage' integrase family. (243 aa)    
Predicted Functional Partners:
SO2212-3
Hypothetical transposase; Predicted by orpheus program; predicted by glimmer program.
 
     0.938
VP2981
Putative integrase/recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
 
 
 
 0.810
VVA1571-3
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.742
SO2212
Putative transposase, IS91 family; Predicted by orpheus program; predicted by glimmer program.
 
     0.739
SO2212-2
Putative transposase, IS91 family; Predicted by orpheus program; predicted by glimmer program.
 
     0.739
SO2212-4
Hypothetical transposase; Predicted by orpheus program; predicted by glimmer program.
 
     0.738
SO2212-5
Hypothetical transposase; Predicted by orpheus program; predicted by glimmer program.
 
     0.738
VVA1571-2
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.731
RB2559
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.727
VVA1571
Hypothetical transposase; Predicted by orpheus program; predicted by glimmer program.
 
     0.719
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.