STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB1114Putative stomatin-like protein; Predicted by orpheus program; predicted by glimmer program. (255 aa)    
Predicted Functional Partners:
PBPRB0890
Hypothetical membrane protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.948
YPO3502
Putative cell division protein FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; In the central section; belongs to the AAA ATPase family.
   
 0.908
PLU4578
Putative hflC protein; HflC and HflK could regulate a protease.
  
     0.516
STY3249
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the UPF0301 (AlgH) family.
  
    0.480
YPO2519
Hypothetical SAM-dependent methyltransferase; Specifically methylates the adenine in position 1618 of 23S rRNA.
       0.443
VV0003
Putative inner membrane protein, 60 kDa; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.
  
 
 0.421
SF4329
Putative Membrane protease subunits; HflC and HflK could encode or regulate a protease.
  
   
0.416
R01158
Hypothetical acetyltransferase; Predicted by orpheus program; predicted by glimmer program.
  
    0.412
Y1095
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.410
PBPRA0684
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
   
    0.400
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.