STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB1114Putative stomatin-like protein; Predicted by orpheus program; predicted by glimmer program. (255 aa)    
Predicted Functional Partners:
PBPRB0890
Hypothetical membrane protein; Predicted by orpheus program; predicted by glimmer program.
 
    0.953
YPO3502
Putative cell division protein FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; In the central section; belongs to the AAA ATPase family.
   
 0.850
Y1095
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.834
PLU4578
Putative hflC protein; HflC and HflK could regulate a protease.
  
     0.516
STY3249
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the UPF0301 (AlgH) family.
  
    0.515
RSC0835
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
   
 0.514
R01158
Hypothetical acetyltransferase; Predicted by orpheus program; predicted by glimmer program.
  
    0.474
PBPRB1337
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
 0.474
SO3560
Putative protease, insulinase family; Predicted by orpheus program; predicted by glimmer program.
  
 0.452
PBPRB0732
Hypothetical Zn-dependent peptidases; Predicted by orpheus program; predicted by glimmer program; Belongs to the peptidase M16 family.
  
 0.452
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.