Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
YBJDHypothetical ATP-dependent endonuclease of the OLD family; Predicted by orpheus program; predicted by glimmer program. (548 aa)    
Predicted Functional Partners:
VV10205-2
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.668
VV10205
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.658
PBPRA0837
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the UPF0255 family.
  
     0.582
PBPRA2947
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the UPF0253 family.
  
     0.579
PBPRB0664
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
    0.553
CPE0447
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.508
PD2072
Putative DNA methylase HsdM; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.477
PP4741
Putative type I restriction enzyme EcoEI Mprotein; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.477
PBPRB0961
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.438
YECH
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.434
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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