STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPE0447Hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (131 aa)    
Predicted Functional Partners:
YPO1079
Putative hydroxyacylglutathione hydrolase GloB; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.
 
  
 0.959
Y2761
Hypothetical glyoxylase II family protein; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.925
SO2044
Putative lactoylglutathione lyase; Predicted by orpheus program; predicted by glimmer program.
  
  
 
0.921
trpB
Putative tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
   
  0.817
S3912
Putative threonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.
   
 0.810
RSP1185
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
   
 
  0.805
T1051
Putative L-serine dehydratase 1; Predicted by orpheus program; predicted by glimmer program; Belongs to the iron-sulfur dependent L-serine dehydratase family.
     
  0.800
PLU2467
Putative tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
     
  0.800
VV12260
Putative L-serine dehydratase 1; Predicted by orpheus program; predicted by glimmer program; Belongs to the iron-sulfur dependent L-serine dehydratase family.
     
  0.800
S2570
Putative D-serine dehydratase; Predicted by orpheus program; predicted by glimmer program; Belongs to the serine/threonine dehydratase family. DsdA subfamily.
     
  0.800
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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