STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ATU4383Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (401 aa)    
Predicted Functional Partners:
YPO2908
Putative Flavodoxin reductase; Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress; Belongs to the globin family. Two-domain flavohemoproteins subfamily.
  
  
 0.871
NOSR
Hypothetical NosR, Regulator of nitric oxide reductase transcription; Predicted by orpheus program; predicted by glimmer program.
 
    0.715
NE2004
Putative nitric-oxide reductase subunit B; Predicted by orpheus program; predicted by glimmer program; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.708
NOSZ
Putative NosZ, Nitrous oxide reductase; Nitrous-oxide reductase is part of a bacterial respiratory system which is activated under anaerobic conditions in the presence of nitrate or nitrous oxide; In the C-terminal section; belongs to the cytochrome c oxidase subunit 2 family.
 
  
 0.707
ECS4040
Putative protease; Predicted by orpheus program; predicted by glimmer program.
 
    0.669
RS02088
Hypothetical NosD, Nitrous oxidase accessory protein; Predicted by orpheus program; predicted by glimmer program.
 
    0.654
PHG248
Hypothetical nitrous oxide metabolic protein; Predicted by orpheus program; predicted by glimmer program.
 
    0.645
RA0647
Hypothetical nosL protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.621
STM3274
Putative protease; Predicted by orpheus program; predicted by glimmer program.
 
    0.566
SMA1276
Putative nitric-oxide reductase; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.565
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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