STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSPTO114Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (370 aa)    
Predicted Functional Partners:
PA5174
Hypothetical beta-ketoacyl synthase; Predicted by orpheus program; predicted by glimmer program; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
  
 0.627
PA3666
Putative 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; Catalyzes the conversion of the cyclic tetrahydrodipicolinate (THDP) into the acyclic N-succinyl-L-2-amino-6-oxopimelate using succinyl-CoA.
 
     0.562
VV2562
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.533
XAC3035
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.524
S1011
Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
  
  
 0.479
VP2167
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.466
PBPRA1667
Putative Beta-ketoacyl synthase; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.461
VPA0415
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.448
YPO3737
Putative regulator of sigma D; Predicted by orpheus program; predicted by glimmer program; Belongs to the Rsd/AlgQ family.
  
     0.444
PP0279
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.424
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.