STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VV20278Putative acetyltransferase; Predicted by orpheus program; predicted by glimmer program. (909 aa)    
Predicted Functional Partners:
ECS2000
Putative pyruvate oxidoreductase; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.798
Z3559
Putative phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
     
 0.726
GYRA
Putative DNA topoisomerase (ATP-hydrolyzing); A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP- [...]
     
 0.668
STM3523
Putative glycerol-3-phosphate repressor protein; Predicted by orpheus program; predicted by glimmer program.
    
   0.633
SRLR
Putative transcriptional regulator, DeoR family; Predicted by orpheus program; predicted by glimmer program.
    
   0.633
SF2730
Putative DeoR-family regulatory protein; Predicted by orpheus program; predicted by glimmer program.
    
   0.633
SF4346
Hypothetical transcriptional regulator; Predicted by orpheus program; predicted by glimmer program.
    
   0.633
STY4737
Putative DEOR-type transcriptional regulator; Predicted by orpheus program; predicted by glimmer program.
    
   0.633
S2921
Hypothetical transcriptional regulator GlpR; Predicted by orpheus program; predicted by glimmer program.
    
   0.633
SF3166
Hypothetical GlpR, transcriptional regulators of sugar metabolism; Predicted by orpheus program; predicted by glimmer program.
    
   0.633
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.