close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP1586Hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (87 aa)    
Predicted Functional Partners:
PBPRA2386
Hypothetical Rec2-related protein; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.615
PELX
Hypothetical exopolygalacturonate lyase; Predicted by orpheus program; predicted by glimmer program.
   
 
 0.606
PBPRB0578
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
   
   0.590
BGLB
Putative glycosyl hydrolase; Predicted by orpheus program; predicted by glimmer program; Belongs to the glycosyl hydrolase 1 family.
   
 
 0.560
PBPRA1357
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
   
   0.509
PBPRB1286
Hypothetical gp36 major capsid-like protein; Predicted by orpheus program; predicted by glimmer program.
   
   0.509
PBPRA1359
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
   
   0.504
RS04080
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
   
   0.504
PBPRA1355
Hypothetical phage portal protein; Predicted by orpheus program; predicted by glimmer program.
   
   0.501
PBPRB1288
Hypothetical phage portal protein; Predicted by orpheus program; predicted by glimmer program.
   
   0.501
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.