STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PBPRB0961Hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (178 aa)    
Predicted Functional Partners:
YCIS
Conserved hypothetical protein; Involved in the assembly of lipopolysaccharide (LPS). Belongs to the LapA family.
  
     0.603
PBPRA3169
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.571
PBPRA2397
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the UPF0227 family.
  
     0.556
PLU3616
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the UPF0231 family.
  
     0.523
YPO3095
Putative inosine-guanosine kinase; Predicted by orpheus program; predicted by glimmer program.
  
     0.516
SF0422
Putative inosine-guanosine kinase; Predicted by orpheus program; predicted by glimmer program.
  
     0.504
PBPRB1639
Hypothetical outer membrane protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.472
PBPRA0876
Hypothetical outer membrane protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.449
YBJD
Hypothetical ATP-dependent endonuclease of the OLD family; Predicted by orpheus program; predicted by glimmer program.
  
     0.438
VC1895
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.431
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.