STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VVA0361Hypothetical protease II; Predicted by orpheus program; predicted by glimmer program. (669 aa)    
Predicted Functional Partners:
VVA0362
Hypothetical outer membrane receptor protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.773
PBPRB0977
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.755
PBPRB0976
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.725
VV21552
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.712
HD0326
Conserved hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.
  
  
 0.444
PBPRB0980
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.438
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.