STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VVA0361Hypothetical protease II; Predicted by orpheus program; predicted by glimmer program. (669 aa)    
Predicted Functional Partners:
VVA0362
Hypothetical outer membrane receptor protein; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.785
PBPRB0977
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.766
PBPRB0976
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.724
VV21552
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.711
Y0139
Putative DegS serine protease; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.578
HD0326
Conserved hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.
  
  
 0.503
PLU3869
ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.
   
  
 0.493
VV0904
Hypothetical rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
  
  
 0.469
PBPRB0980
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.438
PLU3317
Putative phosphoribosylformylglycinamidine (FGAM) synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.
       0.433
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.