STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GALE-2Putative UDP-glucose 4-epimerase; Predicted by orpheus program; predicted by glimmer program; Belongs to the NAD(P)-dependent epimerase/dehydratase family. (338 aa)    
Predicted Functional Partners:
ECS0786
Putative galactose-1-phosphate uridylyltransferase; Predicted by orpheus program; predicted by glimmer program.
  
 0.992
GALK
Putative galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
 
 
 0.936
SO1665
Putative UTP-glucose-1-phosphateuridylyltransferase, galU; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.936
Y2631
Putative glucose-1-phosphate uridylyltransferase; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.934
NE1343
Putative UDP-glucose dehydrogenase; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.921
UGD
Putative nucleotide sugar dehydrogenase; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.921
GALE
UDP-glucose 4-epimerase; Predicted by orpheus program; predicted by glimmer program; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
  
  
 
0.901
PBPRA0352
Hypothetical intercellular adhesion protein A; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.512
FLAG
Hypothetical flagellin FlaG; Predicted by orpheus program; predicted by glimmer program.
    
   0.508
SRMB
Putative ATP-dependent RNA helicase; Predicted by orpheus program; predicted by glimmer program; Belongs to the DEAD box helicase family.
   
   0.481
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.